BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028B03SP1|AL428844
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig925 1285 0.0
3x_Contig983 426 e-119
>3x_Contig925
Length = 3823
Score = 1285 bits (646), Expect = 0.0
Identities = 677/686 (98%), Gaps = 3/686 (0%)
Strand = Plus / Minus
Query: 193 attatcgtcatcactttccctcaggcytacatttttcctctttcttccccttaatgaggt 252
||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 3815 attatcgtcat-actttccctcag-cttacatttttcctctttcttccccttaatgaggt 3758
Query: 253 aacagtttccacagtttttgttgcctcgggtttgcttggttcggtcttggttgcaggttc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 aacagtttccacagtttttgttgcctcgggtttgcttggttcggtcttggttgcaggttc 3698
Query: 313 tttctccactacctctggttgatgtttgarttgtagaggccctttcgaagtcgtatcctt 372
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3697 tttctccactacctctggttgatgtttgaattgtagaggccctttcgaagtcgtatcctt 3638
Query: 373 ctttttagcatcagtttctgatttctccttcaatggcgatgtatcatttgattccgattc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 ctttttagcatcagtttctgatttctccttcaatggcgatgtatcatttgattccgattc 3578
Query: 433 aaccggtttctctcgtttcttgaaaaaagaagatatcgtagcctgtttgtacttcttctt 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 aaccggtttctctcgtttcttgaaaaaagaagatatcgtagcctgtttgtacttcttctt 3518
Query: 493 gccggatgatccaggcatagtagtgacctttttcaacgactttggcgtctcgactgtcat 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 gccggatgatccaggcatagtagtgacctttttcaacgactttggcgtctcgactgtcat 3458
Query: 553 ggataaagaagcttatttcccccccmwaagaatatgaaaacaaccttatactagatagaa 612
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3457 ggataaagaagcttatttcccccccctttgaatatgaaaacaaccttatactagatagaa 3398
Query: 613 aaggcaggtttttttcagatcctctttagctgcgcttattgattccaaaatattagtaaa 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 aaggcaggtttttttcagatcctctttagctgcgcttattgattccaaaatattagtaaa 3338
Query: 673 ctatagttactgtagagcgtgcagtggtgctggtatgaccttttaacctggtgagatgtt 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 ctatagttactgtagagcgtgcagtggtgctggtatgaccttttaacctggtgagatgtt 3278
Query: 733 catgaagatgagttagatgtaaatccttatgatcgttgttttaatatcaaaaaactcaaa 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 catgaagatgagttagatgtaaatccttatgatcgttgttttaatatcaaaaaactcaaa 3218
Query: 793 acgcgaaaaacgcgaaactggtgttttggggagagttttcgggcccatttctggggaccg 852
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 acgcg-aaaacgcgaaactggtgttttggggagagttttcgggcccatttctggggaccg 3159
Query: 853 gaaactggggatgcgattaaaagaca 878
||||||||||||||||||||||||||
Sbjct: 3158 gaaactggggatgcgattaaaagaca 3133
>3x_Contig983
Length = 4410
Score = 426 bits (214), Expect = e-119
Identities = 218/220 (99%)
Strand = Plus / Plus
Query: 10 gtcgtcgtcggagccattagaaagttgagggtttaaagaagtatcttcaacaccttcgtc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4186 gtcgtcgtcggagccattagaaagttgagggtttaaagaagtatcttcaacaccttcgtc 4245
Query: 70 gttatcttcttcctcttcgtcgtcgtctccatcatctttatattcatcctcgctatcatc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4246 gttatcttcttcctcttcgtcgtcgtctccatcatctttatattcatcctcgctatcatc 4305
Query: 130 gtcctcgatcttacttctatttctgcttctcttggacatagagatatctccgtcgtcatc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4306 gtcctcgatcttacttctatttctgcttctcttggacatagagatatctccgtcgtcatc 4365
Query: 190 gtcattatcgtcatcactttccctcaggcytacatttttc 229
||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 4366 gtcattatcgtcatcactttccctcaggcttacatctttc 4405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7137
Number of Sequences: 1807
Number of extensions: 7137
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 2
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)